pLDDT vs protein biophysical properties
Interactive database of AlphaFold models aligned to dynamics information from experimental NMR parameters and computational metrics
This resource enables exploration of datasets where AlphaFold models were correlated with (interpreted) NMR or MD data for proteins in solution, as described in our original large scale analysis. The AlphaFold pLDDT is, for each protein, mapped to the information for three different datasets, with the results visualised at the sequence and structure level.
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Find your protein of interest among the 421 entries stored in our database by typing their UniProt, BMRB or PDB identifier (autocomplete enabled):
Alternatively, select a protein from all available entries or view our example.
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This database contains information with 3 data sources:
S2RCI: Chemical-shift based estimates of dynamics and conformation (RCI-S2, d2D, ShiftCrypt).
S2: Experimentally measured order parameter from NMR relaxation data.
Constava: Conformational state variability and propensities, calculated with the Constava software from Molecular Dynamics trajectories (go to Python package on PyPI).